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Boosting Your Microsoft Secure Score with Practical Enterprise Steps

Reco Security Experts
Updated
July 15, 2025
July 15, 2025

Microsoft Secure Score is a security analytics tool within Microsoft Defender for Office 365 that helps assess and improve an organization’s security posture. Based on your current security configuration, it provides a centralized view and advises actionable steps based on Microsoft best practices. A higher score indicates greater alignment with Microsoft’s recommended security practices, while a lower score suggests potential gaps in configuration.

This article focuses on the detailing you can do to efficiently increase Secure Score in a real-world setting. These recommendations are tailored for enterprise environments and go beyond generic best practices.

Review and Prioritize Secure Score Recommendations

The Microsoft 365 Defender portal surfaces Secure Score recommendations categorized by impact and implementation difficulty. Rather than attempting to increase your score through easy but low-impact changes, it is more effective to start with high-impact recommendations.

These recommendations can be exported to CSV or accessed via the Microsoft Graph API. Each item includes:

  • A description of the action
  • Implementation steps
  • User impact
  • Improvement score
Example of an organization’s current security state.

An overview of an organization's current Microsoft Secure Score, including security metrics, score breakdown, and categorized recommendations for improving security configuration.

Quick Wins for a Stronger Secure Score

Focus on these actions first to maximize your Microsoft Secure Score impact:

  • Disable Legacy Authentication (IMAP, POP3, SMTP)
  • Enforce MFA with Conditional Access
  • Enable Privileged Identity Management (PIM) for just-in-time admin roles
  • Block High-Risk Sign-ins using Conditional Access
  • Apply Microsoft Security Baselines (e.g., Safe Attachments, Safe Links, audit logging)

Enforce Multi-Factor Authentication (MFA)

MFA is one of the strongest protections against credential-based attacks. According to Microsoft, accounts without MFA are more than 99% likely to be compromised in an attack scenario.

Use Conditional Access instead of per-user MFA to enforce policies dynamically based on user, device, location, and risk level. Target high-risk users or roles first and then expand enforcement gradually. Monitor sign-in logs for disruptions.

Use Privileged Identity Management (PIM)

Long-standing privileged access is a major threat. PIM allows you to:

  • Assign users to eligible roles
  • Require activation with MFA
  • Define just-in-time access duration
  • Set approval workflows

In addition to reducing your Secure Score risk level, PIM ensures that least privilege is enforced consistently.

To enable PIM:

  1. Navigate to Entra ID > PIM.
  2. Select “Azure AD roles” and assign eligible roles.
  3. Configure activation requirements for each role.

Note: Users need P2 licensing for PIM.

For large organizations, automate PIM assignments using the Microsoft Graph Identity Governance APIs.

Monitor and Respond to Risky Sign-ins

Azure AD Identity Protection uses machine learning to detect risky users and risky sign-in behavior.

High-Risk Indicators Include:

  • Sign-ins from anonymous IPs
  • Impossible travel events
  • Known leaked credentials

Automated Mitigation Options:

  • Block sign-in
  • Require password reset
  • Enforce MFA re-registration

Ensure you monitor the “Risky Users” and “Risky Sign-ins” reports in the Azure portal and integrate alerts into your SIEM.

Licensing Note

Some features mentioned in this article require premium Microsoft licenses:

  • Microsoft Defender for Office 365 Plan 2 – For Safe Attachments, Safe Links, and Threat Policies
  • Microsoft Entra ID P2 – Required for Identity Protection, PIM, and Access Reviews
  • Microsoft 365 E5 – Includes the most advanced security and compliance capabilities

Be sure to verify license availability before implementing advanced features.

Enforce Microsoft 365 Security Baselines

Security baselines are recommended configurations aligned with Microsoft security standards. These include:

  • Blocking macros in Office
  • Enabling audit logging
  • Applying DLP policies
  • Configuring Safe Attachments/Safe Links

Key Configuration: Safe Attachments

  • Enable ATP Safe Attachments for email.
  • Use the “Block” action for detected malware.
  • Turn on “Dynamic Delivery” to prevent message delays.

Apply these policies via Microsoft 365 Security & Compliance Center or via PowerShell for automation. For Intune-managed devices, enforce these baselines using device configuration profiles.

Restrict External Sharing and Device Access

Misconfigured external sharing can lead to unintentional data exposure. Secure Score recommends tightening guest access in SharePoint, OneDrive, and Teams.

Actions:

  • Limit sharing to specific domains
  • Require guest expiration
  • Disable guest access to directory data

Device Control via Conditional Access

Block access from unmanaged or non-compliant devices. For BYOD environments, consider app protection policies or require app-based access via Microsoft Defender for Endpoint.

Automate Secure Score Monitoring

Automating Secure Score insights allows you to build dashboards, track progress over time, and trigger alerts on regressions.

 Security view in Microsoft 365 with score and recommended actions.

Dashboard view of Microsoft Secure Score showing current score, improvement actions, and categorized breakdown across identity, devices, and apps.

Integrate Graph Security API with your SOAR platform to create auto-remediation workflows.

Review Guest Access and Orphaned Accounts

Expired or orphaned guest accounts increase your attack surface. These accounts often bypass access reviews or MFA settings.

Recommendations:

  • Use Access Reviews in Entra ID Governance.
  • Set expiration policies for guest accounts.
  • Remove guests with no sign-ins in the last 30 days.

Audit and clean these accounts regularly. Use PowerShell or Graph API to automate this process.

Integrate Defender for Cloud Apps for Real-Time Control

Microsoft Defender for Cloud Apps (formerly MCAS) enhances visibility and control over SaaS app usage. It integrates with Microsoft 365 to provide session-level control, anomaly detection, and real-time monitoring.

Actions to Improve Secure Score:

  • Enable app discovery to detect unsanctioned SaaS usage (shadow IT).
  • Apply session control policies to monitor or block risky behavior.
  • Set up anomaly detection alerts for impossible travel, ransomware activity, and suspicious downloads.

Example: Block Downloads on Unmanaged Devices

  1. Go to Defender for Cloud Apps > Conditional Access App Control.
  2. Create a session policy:
    • Control file download
    • Apply to unmanaged devices
    • Target SharePoint, OneDrive, Teams

This prevents data exfiltration even when credentials are valid, but access happens from a risky endpoint.

Insight by
Gal Nakash
Cofounder & CPO at Reco

Gal is the Cofounder & CPO of Reco. Gal is a former Lieutenant Colonel in the Israeli Prime Minister's Office. He is a tech enthusiast, with a background of Security Researcher and Hacker. Gal has led teams in multiple cybersecurity areas with an expertise in the human element.

Expert Insight: Advanced Recommendations for Security-Mature Organizations


Add more controls, configurations, and telemetry to reduce attack surface and speed up responses for security-mature organizations as they go beyond checklists.

  • PIM for Just-in-Time Access: Reduce standing access by time-bound and approval-based elevation for all administrator roles, including read-only ones.
  • Disable Services That Are Unused: If you do not use any services, such as SharePoint or Yammer, thoroughly disable or restrict them to prevent dormant services from being exploited by attackers.
  • Conditional Access Policy Analytics Preview: Use Conditional Access Insights & Reporting to evaluate the impact of changes to policies before deployment.
  • Advanced Hunting Queries: Leverage Microsoft 365 Defender advanced hunting to write KQL queries across signals for email, identity, and devices.
  • App Governance Add-on: Manage risky app behaviors and enforce governance for OAuth apps with this rarely used yet powerful add-on.

Conclusion

The steps mentioned above will significantly improve an organization's Microsoft Secure Score while actual defenses are being enhanced. Most items will close technical gaps while fulfilling compliance and audit needs. Emphasize automation, continuous monitoring, and least privileged service to keep your Microsoft 365 environment secure.

No items found.
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